ANOVA (1) AmpSeq (2) Amplicon Sequencing (1) Amplicon sequencing (2) Avi Karn (1) Bioinformatics (2) Composite Interval Mapping (1) Computers (1) Correlation (1) DESeq (1) Data analysis (1) Data products (1) Differential Expression (1) GBS (1) GLM (2) GLMNET (1) GLMnet (1) GUI (3) GWAS (1) Genetic Admixture (1) Genetic Map plot (1) Genetic Mapping (1) Genetic Marker (1) Genetic Markers (1) Genetic data (3) Genetic diversiy (1) Genome-wide association test (1) Genomic Prediction (1) Genomic Selection (1) Genotype (1) Haplotypes (1) Haploview (1) Heritability (1) Imputation (1) Joint-Linkage (1) Joint-Linkage Mapping (1) Kernel Composition (1) Kernel Compostion (1) LASSO (1) LD plot (1) Lep-MAP3 (1) Linear model (1) Linkage disequilibrium (1) MDS (1) MLM (1) Machine Learning (2) MapChart software (1) Mapchart (1) Marker Assisted Selection (1) Mendelian Error (1) Multidimensional Scaling (1) Multiplex PCR (1) NIL (1) NIR (2) Near Infrared Spectroscopy (1) PCA (1) PLINK (1) PLSR (1) Population structure (1) Pruning (1) QC (1) QTL mapping (1) Quantitative Trait (1) Quantitative traits (1) R (2) RNA-Seq (1) Random Forest (2) SNP calling (1) SSR (1) Seed Oil (1) Shiny (1) Shinyapps (1) Soybean (1) Structure software (1) T-test (1) TASSEL (5) Teosinte (2) Tukey Test (1) Universal Marker (1) Vitis (1) VitisGen (1) Wine Ethusiast Magzine (1) Winemag (1) bcftools (1) data analysis (1) r/qtl (1) rhAmpSeq (1) statistics (1)

 ANOVA (1)

ANOVA and Tukey test in R software in just few steps!

 AmpSeq (2)

Marker Assisted Selection using AmpSeq data
Amplicon Sequencing (AmpSeq): Concept and data analysis

 Amplicon Sequencing (1)

Marker Assisted Selection using AmpSeq data

 Amplicon sequencing (2)

Publication: Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus
Amplicon Sequencing (AmpSeq): Concept and data analysis

 Avi Karn (1)

In the news: How Computers are Being Used to Hack Grapes

 Bioinformatics (2)

Evaluate Genotype Imputation Accuracy in TASSEL GUI
Call GBS SNPs in 7 steps using TASSEL GBSv2 pipeline

 Composite Interval Mapping (1)

QTL mapping using Composite Interval Mapping (CIM) method in R software

 Computers (1)

In the news: How Computers are Being Used to Hack Grapes

 Correlation (1)

Correlation analysis using R Shiny Application

 DESeq (1)

RNA-Seq data analysis in R - Investigate differentially expressed genes in your data!

 Data analysis (1)

RNA-Seq data analysis in R - Investigate differentially expressed genes in your data!

 Data products (1)

Correlation analysis using R Shiny Application

 Differential Expression (1)

RNA-Seq data analysis in R - Investigate differentially expressed genes in your data!

 GBS (1)

Call GBS SNPs in 7 steps using TASSEL GBSv2 pipeline

 GLM (2)

Import SSR marker data in TASSEL software
Genome-wide Association Study (GWAS) in TASSEL (GUI)

 GLMNET (1)

Utilizing Machine Learning algorithms (GLMnet and Random Forest models) for Genomic Prediction of a Quantitative trait

 GLMnet (1)

Machine Learning algorithms for Genomic Selection of Quantitative Traits with varying Heritabilities

 GUI (3)

Evaluate Genotype Imputation Accuracy in TASSEL GUI
Pruning genetic markers based on their physical distance and linkage disequilibrium (LD)
Genome-wide Association Study (GWAS) in TASSEL (GUI)

 GWAS (1)

Genome-wide Association Study (GWAS) in TASSEL (GUI)

 Genetic Admixture (1)

Investigate genetic admixture using STRUCTURE software

 Genetic Map plot (1)

Plot Genetic Maps in few steps using MapChart software

 Genetic Mapping (1)

Genetic map construction in LepMap3

 Genetic Marker (1)

Amplicon Sequencing (AmpSeq): Concept and data analysis

 Genetic Markers (1)

Pruning genetic markers based on their physical distance and linkage disequilibrium (LD)

 Genetic data (3)

Check for mendelian errors using pedigree and genotype information
Investigate genetic admixture using STRUCTURE software
How to use Multidimensional Scaling (MDS) to quality control your genetic data?

 Genetic diversiy (1)

Publication: Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

 Genome-wide association test (1)

Genome-wide Association Study (GWAS) in TASSEL (GUI)

 Genomic Prediction (1)

Utilizing Machine Learning algorithms (GLMnet and Random Forest models) for Genomic Prediction of a Quantitative trait

 Genomic Selection (1)

Machine Learning algorithms for Genomic Selection of Quantitative Traits with varying Heritabilities

 Genotype (1)

Evaluate Genotype Imputation Accuracy in TASSEL GUI

 Haplotypes (1)

Haplotype extraction and LD visualization in Haploview

 Haploview (1)

Haplotype extraction and LD visualization in Haploview

 Heritability (1)

Machine Learning algorithms for Genomic Selection of Quantitative Traits with varying Heritabilities

 Imputation (1)

Evaluate Genotype Imputation Accuracy in TASSEL GUI

 Joint-Linkage (1)

Publication: Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize

 Joint-Linkage Mapping (1)

Presentation: Evaluating Teosinte Alleles for Kernel Compositionn Traits in Maize

 Kernel Composition (1)

Presentation: Evaluating Teosinte Alleles for Kernel Compositionn Traits in Maize

 Kernel Compostion (1)

Publication: Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize

 LASSO (1)

Utilizing Machine Learning algorithms (GLMnet and Random Forest models) for Genomic Prediction of a Quantitative trait

 LD plot (1)

Haplotype extraction and LD visualization in Haploview

 Lep-MAP3 (1)

Genetic map construction in LepMap3

 Linear model (1)

Genome-wide Association Study (GWAS) in TASSEL (GUI)

 Linkage disequilibrium (1)

Pruning genetic markers based on their physical distance and linkage disequilibrium (LD)

 MDS (1)

How to use Multidimensional Scaling (MDS) to quality control your genetic data?

 MLM (1)

Genome-wide Association Study (GWAS) in TASSEL (GUI)

 Machine Learning (2)

Machine Learning algorithms for Genomic Selection of Quantitative Traits with varying Heritabilities
Utilizing Machine Learning algorithms (GLMnet and Random Forest models) for Genomic Prediction of a Quantitative trait

 MapChart software (1)

Plot Genetic Maps in few steps using MapChart software

 Mapchart (1)

Genetic map construction in LepMap3

 Marker Assisted Selection (1)

Marker Assisted Selection using AmpSeq data

 Mendelian Error (1)

Check for mendelian errors using pedigree and genotype information

 Multidimensional Scaling (1)

How to use Multidimensional Scaling (MDS) to quality control your genetic data?

 Multiplex PCR (1)

Amplicon Sequencing (AmpSeq): Concept and data analysis

 NIL (1)

Publication: Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize

 NIR (2)

Presentation: Evaluating Teosinte Alleles for Kernel Compositionn Traits in Maize
Publication: Development of Rigorous Fatty Acid Near-Infrared Spectroscopy Quantitation Methods in Support of Soybean Oil Improvement

 Near Infrared Spectroscopy (1)

Publication: Development of Rigorous Fatty Acid Near-Infrared Spectroscopy Quantitation Methods in Support of Soybean Oil Improvement

 PCA (1)

Import SSR marker data in TASSEL software
Pruning genetic markers based on their physical distance and linkage disequilibrium (LD)

 PLSR (1)

Publication: Development of Rigorous Fatty Acid Near-Infrared Spectroscopy Quantitation Methods in Support of Soybean Oil Improvement

 Population structure (1)

Investigate genetic admixture using STRUCTURE software

 Pruning (1)

Pruning genetic markers based on their physical distance and linkage disequilibrium (LD)

 QC (1)

How to use Multidimensional Scaling (MDS) to quality control your genetic data?

 QTL mapping (1)

QTL mapping using Composite Interval Mapping (CIM) method in R software

 Quantitative Trait (1)

Machine Learning algorithms for Genomic Selection of Quantitative Traits with varying Heritabilities

 Quantitative traits (1)

Utilizing Machine Learning algorithms (GLMnet and Random Forest models) for Genomic Prediction of a Quantitative trait

 R (2)

Correlation analysis using R Shiny Application
QTL mapping using Composite Interval Mapping (CIM) method in R software

 RNA-Seq (1)

RNA-Seq data analysis in R - Investigate differentially expressed genes in your data!

 Random Forest (2)

Machine Learning algorithms for Genomic Selection of Quantitative Traits with varying Heritabilities
Utilizing Machine Learning algorithms (GLMnet and Random Forest models) for Genomic Prediction of a Quantitative trait

 SNP calling (1)

Call GBS SNPs in 7 steps using TASSEL GBSv2 pipeline

 SSR (1)

Import SSR marker data in TASSEL software

 Seed Oil (1)

Publication: Development of Rigorous Fatty Acid Near-Infrared Spectroscopy Quantitation Methods in Support of Soybean Oil Improvement

 Shiny (1)

Correlation analysis using R Shiny Application

 Shinyapps (1)

Correlation analysis using R Shiny Application

 Soybean (1)

Publication: Development of Rigorous Fatty Acid Near-Infrared Spectroscopy Quantitation Methods in Support of Soybean Oil Improvement

 Structure software (1)

Investigate genetic admixture using STRUCTURE software

 T-test (1)

ANOVA and Tukey test in R software in just few steps!

 TASSEL (5)

Evaluate Genotype Imputation Accuracy in TASSEL GUI
Import SSR marker data in TASSEL software
Pruning genetic markers based on their physical distance and linkage disequilibrium (LD)
Genome-wide Association Study (GWAS) in TASSEL (GUI)
Call GBS SNPs in 7 steps using TASSEL GBSv2 pipeline

 Teosinte (2)

Presentation: Evaluating Teosinte Alleles for Kernel Compositionn Traits in Maize
Publication: Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize

 Tukey Test (1)

ANOVA and Tukey test in R software in just few steps!

 Universal Marker (1)

Publication: Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

 Vitis (1)

Publication: Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

 VitisGen (1)

In the news: How Computers are Being Used to Hack Grapes

 Wine Ethusiast Magzine (1)

In the news: How Computers are Being Used to Hack Grapes

 Winemag (1)

In the news: How Computers are Being Used to Hack Grapes

 bcftools (1)

Check for mendelian errors using pedigree and genotype information

 data analysis (1)

ANOVA and Tukey test in R software in just few steps!

 r/qtl (1)

QTL mapping using Composite Interval Mapping (CIM) method in R software

 rhAmpSeq (1)

Publication: Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

 statistics (1)

ANOVA and Tukey test in R software in just few steps!